Transform
qgraph
intoggplot
plot(cor.net)
plot(bns.dag)
plot(dpi.dag)
Plot network results
print(cor.net)
print(bns.dag)
print(dpi.dag)
Usage
# S3 method for class 'cor.net'
plot(x, scale = 1.2, ...)
# S3 method for class 'cor.net'
print(x, scale = 1.2, file = NULL, width = 6, height = 4, dpi = 500, ...)
# S3 method for class 'bns.dag'
plot(x, algorithm, scale = 1.2, ...)
# S3 method for class 'bns.dag'
print(
x,
algorithm = names(x),
scale = 1.2,
file = NULL,
width = 6,
height = 4,
dpi = 500,
...
)
# S3 method for class 'dpi.dag'
plot(
x,
k = min(x$DPI$k.cov),
show.label = TRUE,
digits.dpi = 2,
color.dpi.insig = "#EEEEEEEE",
scale = 1.2,
...
)
# S3 method for class 'dpi.dag'
print(
x,
k = min(x$DPI$k.cov),
show.label = TRUE,
digits.dpi = 2,
color.dpi.insig = "#EEEEEEEE",
scale = 1.2,
file = NULL,
width = 6,
height = 4,
dpi = 500,
...
)
Arguments
- x
Object (class
cor.net
/bns.dag
/dpi.dag
) returned fromcor_net()
/BNs_dag()
/DPI_dag()
.- scale
Scale the
grob
object ofqgraph
on theggplot
canvas. Defaults to1.2
.- ...
Other arguments (currently not used).
- file
File name of saved plot (
".png"
or".pdf"
).- width, height
Width and height (in inches) of saved plot. Defaults to
6
and4
.- dpi
Dots per inch (figure resolution). Defaults to
500
.- algorithm
[For
bns.dag
] Algorithm(s) to display. Defaults to plot the finally integrated DAG from BN results for each algorithm inx
.- k
[For
dpi.dag
] A single value ofk.cov
to produce the DPI(k) DAG. Defaults tomin(x$DPI$k.cov)
.- show.label
[For
dpi.dag
] Show labels of partial correlations, DPI(k), and their significance on edges. Defaults toTRUE
.- digits.dpi
[For
dpi.dag
] Number of decimal places of DPI values displayed on DAG edges. Defaults to2
.- color.dpi.insig
[For
dpi.dag
] Edge color for insignificant DPIs. Defaults to"#EEEEEEEE"
(faded light grey).
Value
Return a ggplot
object that can be further modified and used in ggplot2::ggsave()
and cowplot::plot_grid()
.